Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015890123.1_cds_XP_016444786.1_39812
CDS Infomation

[gene=LOC107770041] [db_xref=GeneID:107770041] [protein=synaptotagmin-5-like] [protein_id=XP_016444786.1] [location=join(71772..71963,72588..72662,72769..72876,73110..73142,73244..73333,73427..73552,73817..73960,74168..74584,75103..75237,76221..76445,76653..76928,77108..77245,77520..77825,78057..78284)] [gbkey=CDS]
Sequence

ATGGTGAAGAAAAAGAGAGCAAGTTCATTGGATGTGAGACAAGCTATGGATTTCTTGAAT
CAGTTGTTAGCTGATAAGCCAATTCTTCCGTTTGTAATTCCACTATTTTTAGTTGTTTGG
GGGATAGAGAAGTGGATTTTCTCTCTCACCAATTGGGTTCCTCTTACCGTGGCTGTCTGG
GCAGTTTTTCAGTATGGAAGTTACCAACGCAAAATTCTTGCAGAAGACTTGAATAAGAAA
TGGATGCAAGTGTTGCTGGAGACATCACCAACAACACCTTTGGAGCAGTGTGAGTGGCTG
AATAAGCTATTAATTGAAATTTGGCCTACTTATATGAGCCCTAGGCTTTCTTTGAGGTTC
TCTTCTATTGTTGAGAGACGCATGAAACAACGAAAACCAAAGTTGATTGAAAAGATTGAA
TTACAAGAATTTTCACTTGGTTCTAAACCTCCGCTCTTAGGGCTTCGTGGGATACGGTGG
TCAACTTCGGGTGATCAGCGAATTGTGCATCTTGGTTTTGACTGGGACACTACTGATATA
AGTATCATGTTGCTTGCCAAGTTGGGAAAGCCATTAATGGGGACTGCTCGGATAGTTATT
AACAGCATCCACATCAAGGGTGATCTCCGCTTAGTGCCAGTTCTAGATGGAAGAGCATTT
TTATACTCATTTGTGGCGCCTCCGGAGGTTAGGATAGGCGTTGCATTTGGTAGTGGTGGA
AGCCAATCTCTTCCAGCAACTGAGCTGCCAGGTGTTTCTGCATGGCTGGTTAAACTTGTT
AATGACTCCTTATCTAAGCGGATGGTTGAACCTCGCCGTAATTGTTTTTCTTTGCCTGCG
GTGAATTTATTCAAAAGGGCTGTCGCTGGTGTACTCTCTGTGACCGTGATGTCTGCCAGC
AAATTGTCAAGAAGTAACCTGAGGAGTAGCCCTTCCAGGAAACAGAGCTCATCGACAGAT
GGTTATGTGGAGAATCTCCATGATTACAAGGATTTGCGGACATTTGTCGAGGTTGAACTT
GAAGAATTAACCAGGAAAACAGATGTCAGACCAGGATCCTGCCCTAGATGGGACTCAAAG
TTCAATATGACTCTACATGAAGATGCAGGAACAATTAAGTTCAATTTATTTGAATGCACT
CCTGGCAGCGTGAAGTATGACTATCTGACAAGCTGTGAAATAAAGATGAGATATGTTGCA
GATGATTCAACAATATTTTGGGCGACGGGAGCTGACTCCGCTGCTATAGCCAGGCGTGCT
GAGTTTTGTGGTAAAGAAATTGAAATGACGGTTCCATTTGAGGGGATTAATTCAGGAGAG
TTGACAGTGAAACTCGTCTTGAAGGAATGGCAATTCGCTGATGGTTCACATAGCTCGAAC
GGTTTACCTATCAGCTCTCAGCATTCACTCAATGGTACATCAAGTTTCCTACCTAGAACA
GGTAGAAAAATATATGTGACAATAGTTGAAGGAAAGGACCTTCCATCAAAAGATAAATTT
GGAAAGCCTGGTTCTGGCTGTTACGTGAAATTCCAGTACGGGAAGGCTCTGAAAAGAACG
AAAACTGTGCCACATACTTCAGATCCTACCTGGAATCAGAAGTTTGAATTTGATGAAATA
GGTGGTGGCGAATATCTGAAGATAAAGTGCTTCATTGAGGAGATGTTTGGAGACGAGAAC
ATTGGTAGTGCACGAGTAAGCTTAGAAGGACTTATAGAAGGTTCCCCAAGGGATGTGTGG
ATTCCTCTTGAGAAAGTGAATTCTGGAGAATTGCGGCTCCAGATAGAAGCAGTCAGAGTT
GATGACTATGAAGGATCCAAGAGTTCAAATGGTAGTTCTTCCAATGGTTGGGTTGAACTT
GCTCTCATCGAGGCAAAAGACCTTGTTGCTGCTGATCTCCGAGGAACCAGCGATCCTTAT
GTGAGGGTACAATATGGCAATTTGAAGAGAAGAACTAAGGTTATGTATAAAACTTTGCAT
CCTCAATGGCACCAGACATTAGAATTTCCCGATGATGGGAGTCCCCTGGAGTTGCATGTT
AAGGACCACAACCATTTACTGCCAACAGCAAGCATAGGTGATTGTGTCGTTGAATACCAA
AGGTTGCCTCCAAATCAAATGTTTGACAAGTGGATACCCCTTCAAAATGTGAAGAAGGGA
GAGATCCATGTTCAAGTCACACGCAAAGTTCCGGACCTAGAAAAGAAAACAAGCGTAGAT
TCTGAGTCCTCAGTAACCAAAGCACGCCGCCAAATCTCTAACCAGATGAAACAAATGATG
ATCAAGTTCCAGTCTTTTATAGAAGACGATGATCTTGAAGGACTTTCAGCATCGCTGCAC
GAAATGGAAAGCCTACACGAATCCCAAGAGGAGTTTATGGTCCAGCTTGAGACTGAACAA
ACACTTTTGCTCAACAAGATAAATGAGCTTGGCCAGGAAATCATTAATTCATCACCTTCC
TATGCTTTGGGTAGAAGACCTACTTTCCCTTGA

Peptide Sequence

PEP ID

XP_016444786.1
PEP Infomation

PREDICTED: synaptotagmin-5-like [Nicotiana tabacum]
Sequence

MVKKKRASSLDVRQAMDFLNQLLADKPILPFVIPLFLVVWGIEKWIFSLTNWVPLTVAVW
AVFQYGSYQRKILAEDLNKKWMQVLLETSPTTPLEQCEWLNKLLIEIWPTYMSPRLSLRF
SSIVERRMKQRKPKLIEKIELQEFSLGSKPPLLGLRGIRWSTSGDQRIVHLGFDWDTTDI
SIMLLAKLGKPLMGTARIVINSIHIKGDLRLVPVLDGRAFLYSFVAPPEVRIGVAFGSGG
SQSLPATELPGVSAWLVKLVNDSLSKRMVEPRRNCFSLPAVNLFKRAVAGVLSVTVMSAS
KLSRSNLRSSPSRKQSSSTDGYVENLHDYKDLRTFVEVELEELTRKTDVRPGSCPRWDSK
FNMTLHEDAGTIKFNLFECTPGSVKYDYLTSCEIKMRYVADDSTIFWATGADSAAIARRA
EFCGKEIEMTVPFEGINSGELTVKLVLKEWQFADGSHSSNGLPISSQHSLNGTSSFLPRT
GRKIYVTIVEGKDLPSKDKFGKPGSGCYVKFQYGKALKRTKTVPHTSDPTWNQKFEFDEI
GGGEYLKIKCFIEEMFGDENIGSARVSLEGLIEGSPRDVWIPLEKVNSGELRLQIEAVRV
DDYEGSKSSNGSSSNGWVELALIEAKDLVAADLRGTSDPYVRVQYGNLKRRTKVMYKTLH
PQWHQTLEFPDDGSPLELHVKDHNHLLPTASIGDCVVEYQRLPPNQMFDKWIPLQNVKKG
EIHVQVTRKVPDLEKKTSVDSESSVTKARRQISNQMKQMMIKFQSFIEDDDLEGLSASLH
EMESLHESQEEFMVQLETEQTLLLNKINELGQEIINSSPSYALGRRPTFP

Transcript Sequence

Gene sequence data has not been registered.